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Endoscopy for Autoimmune Diagnosis: How It Helps Detect Celiac, Crohn’s, and More

  • Writer: Gastro Center of Maryland
    Gastro Center of Maryland
  • May 4
  • 5 min read

Updated: Jun 20

Many young adults, like Carla, find it difficult to deal with fatigue, erratic symptoms, and unexplained stomach problems. It's normal to feel nervous when your doctor suggests getting an endoscopy to look into conditions like Crohn's disease or celiac disease. But the first step to getting your health back is to understand how this test operates and how it can provide useful answers.

 

What Is an Endoscopy and How Does It Work?


A diagnostic procedure called an endoscopy allows you to see inside your digestive tract. In order to examine regions such as the esophagus, stomach, small intestine, or colon, a thin, flexible tube known as an endoscope is inserted through the mouth (for the upper GI tract) or rectum (for the lower GI tract).


There are two common types used for autoimmune diagnostics:

●     Upper Endoscopy (EGD): This allows doctors to examine the esophagus, stomach, and upper small intestine (duodenum).

●     Colonoscopy: This allows visualization of the colon and rectum and is often used in diagnosing inflammatory bowel diseases.

Sometimes, a capsule endoscopy is used where you swallow a small camera that takes images throughout your small intestine.


Endoscopy and Celiac Disease Diagnosis:


When gluten is consumed, the small intestine is attacked by the immune system in celiac disease, an autoimmune condition. Villous atrophy, or damage to the tiny finger-like projections in the small intestine that absorb nutrients, is frequently the outcome.

Doctors use endoscopy to:

●     Visually inspect the small intestine lining for signs of damage.

●     Take biopsies (tiny samples of tissue) from the duodenum to confirm whether the villi are flattened or inflamed.

●     Confirm celiac disease when blood tests are inconclusive or suggest abnormalities.

In many cases, even people who test negative on blood panels may still show intestinal damage through endoscopy, making this test a critical step toward diagnosis.


How Endoscopy Helps Diagnose Crohn’s Disease?


Another autoimmune disorder that inflames the gastrointestinal tract is Crohn's disease. Although it can happen anywhere from the mouth to the rectum, it usually affects the small intestine. Crohn's disease inflammation is patchy and can affect deeper layers of the intestinal wall, in contrast to celiac disease.


Endoscopy is used to:

●     Identify ulcers, strictures (narrowing), or cobblestone patterns that are characteristic of Crohn’s.

●     Take biopsies from affected areas for microscopic analysis.

●     Determine the location and extent of inflammation, which helps in selecting appropriate treatment.

The first step in diagnosing Crohn's disease is typically a colonoscopy, but if the colon seems normal but the symptoms are still present, a capsule endoscopy may be used to examine the small intestine.


Other Autoimmune Conditions Where Endoscopy Plays a Role:


Endoscopy isn’t limited to just celiac or Crohn’s. Additionally, it aids in the diagnosis of additional immune-mediated or autoimmune diseases like:

 

●     One kind of inflammatory bowel disease that solely affects the colon is ulcerative colitis. A colonoscopy shows persistent inflammation that begins in the rectum.

 

●     Eosinophilic Esophagitis: This immunological disorder, which causes inflammation in the esophagus, is frequently confused with acid reflux. Biopsies verify the diagnosis, and upper endoscopy aids in identifying esophageal swelling, rings, or furrows.

 

●     Upper endoscopy with biopsy can be used to diagnose autoimmune gastritis, which involves inflammation of the stomach lining.

 

Endoscopy can be used to visualize and confirm the distinct tissue change patterns associated with each of these conditions.

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Preparing for an Endoscopy:


Preparation depends on the type of endoscopy you’re undergoing: 

For Upper Endoscopy:

●     You’ll be asked to fast (no food or drink) for 6–8 hours before the procedure.

●     Your provider may ask you to stop certain medications temporarily.

For Colonoscopy:

●     A bowel cleanse is required. This usually involves a liquid diet for a day and taking a strong laxative the night before.

●     It's important to follow the prep instructions carefully to ensure clear visuals during the exam.


The majority of procedures are performed under mild sedation, which will make you feel at ease or even put to sleep. Someone must go with you to and from the appointment.


What to Expect During and After the Procedure:


During the Procedure:

●     The procedure typically takes 15–30 minutes.

●     You may feel pressure or bloating, but sedation will keep you comfortable.

●     The doctor may take one or more biopsies, which are quick and painless.

After the Procedure:

●     As the sedative wears off, you will rest for a brief period of time.

●     Some patients have mild bloating (for a colonoscopy) or a sore throat (for an upper endoscopy), but these side effects go away fast.

●     Information regarding the observations made during the procedure will be provided to you.

●     The results of a biopsy are usually available in a few days.



When Should You Consider Endoscopy?


Endoscopy might be suggested if your symptoms are persistent or inexplicable. Typical explanations include:

●     Ongoing abdominal pain, bloating, or cramping

●     Persistent diarrhea, constipation, or both

●     Unexplained weight loss

●     Fatigue or signs of nutrient deficiencies

●     Positive or inconclusive blood tests for autoimmune diseases

Early endoscopic testing can provide comfort or a specific diagnosis, which can result in better outcomes and quicker relief for young, proactive, health-conscious women like Carla.


Benefits vs. Risks of Endoscopy:


Even though endoscopy is thought to be extremely safe, there are risks associated with any procedure. Common adverse effects include drowsiness or bloating. Rare dangers include a GI lining tear or bleeding, particularly if a biopsy is performed.

However, the benefits far outweigh the risks:

●     Accurate diagnosis

●     Early intervention

●     Targeted treatment plans

●     Relief from prolonged uncertainty

In autoimmune conditions, the earlier the diagnosis, the better your chances of managing symptoms and preventing long-term complications.


Conclusion: Take Charge of Your Digestive Health


The symptoms of autoimmune digestive disorders can overlap and are complicated. One of the most effective methods for establishing clarity, validating a diagnosis, and advancing with assurance is an endoscopy.

 

Consider consulting a gastroenterologist about whether endoscopy is appropriate for you if, like Carla, you are experiencing ambiguous gastrointestinal symptoms or suspect a condition like Crohn's or celiac.

 

Ready for Answers?


Avoid waiting for symptoms to get worse. If you suffer from food sensitivities, digestive problems, or exhaustion:

●     Jot down the duration of your symptoms.

●     Inquire with your primary care physician about a specialist referral.

●     Prepare inquiries regarding the endoscopy procedure, recuperation, and subsequent actions.


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Find out how endoscopy aids in the diagnosis of autoimmune diseases such as Crohn's and celiac disease. Know the steps, how to prepare, the advantages, and when to consult a specialist. Call Gastro Center of Maryland Now.


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